Everything You Need for
Accurate Shopify Accounting

weintegrate is the fastest and most accurate way to sync Shopify with QuickBooks Online and automatically reconcile Shopify Payouts. Built for business owners, merchants, accountants, and bookkeepers who demand accuracy with actual transaction documents instantly to make informed decisions.

Core Features

Built Differently by Design, these fundamentals make weintegrate different

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Instant Sync to QuickBooks Online (QBO)

Every Shopify order appears in QuickBooks Online instantly, not in batches at end of day or a week later. See accurate financials any time you need them and make informed decisions.

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Actual Transaction Documents

Each order creates a clear Sales Receipt / Refund Receipt or Invoice / Credit Memo transaction document in QuickBooks Online. No aggregated "Frankenstein" journal entries that hide what actually happened.

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Accurate

Transaction documents created in your QuickBooks Online accounting system that match your Shopify orders to the penny. No mystery discrepancies to chase down.

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Customer Matching โ€” Unique or Bulk

Your business, your rules. Track every Shopify buyer as their own QuickBooks customer for full sales history and repeat-purchase visibility โ€” or consolidate all store sales into a single bulk customer to keep your chart of accounts clean. Switch any time. Both approaches are fully GAAP-compliant and work for any business model.

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Item Matching โ€” Unique or Bulk

Map each Shopify product to its own QuickBooks item for line-item sales reporting โ€” or route all sales through a single bulk item per store for frictionless bookkeeping without inventory overhead. When unique items are enabled and a product is configured as an inventory item in QBO, quantities are decremented automatically as orders sync.

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Operational Dashboard

Real-time snapshot of your Shopify operations across every connected store โ€” from a single screen. Five document views give instant visibility: Open Sales, Fulfilled Sales, Cancellations, Refunds, and Payouts โ€” each with sync status indicators, quick filters, and daily and month-to-date totals. Know exactly where every order and payout stands without opening Shopify or QuickBooks.

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Sales Tax Handled Correctly

Multi-jurisdiction sales tax mapped accurately to QuickBooks Online. Economic and physical nexus handled correctly. No manual tax entry spreadsheets needed.

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Automatic Reconciliation

Payments, refunds, and fees all sync correctly. Bank reconciliation becomes trivial instead of a monthly nightmare.

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10-Minute Setup

Connect Shopify and QuickBooks Online in minutes, not hours. No complex mapping or configuration gymnastics required.

Built for Business Owners and Merchants, loved by Accountants and Bookkeepers

Instant and accurate visibility with GAAP-compliant design that makes month-end close actually pleasant

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Audit-Friendly Records

Clear transaction history with Shopify orders (and their fulfillments, refunds, or cancellations) associated to QuickBooks Online transaction documents. Trace any sale in seconds. No aggregated journal entries hiding details making tracking down issues complex and lengthy.

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GAAP principles from day one

No weird workarounds or "close enough" compromises. Built with GAAP principles from day one. Actual transaction documents in QuickBooks Online that match Shopify orders and Shopify payouts.

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Transaction-Level Detail

See every fee, discount, tax, shipping, and payment method broken out per order. No black-box aggregated summary numbers to reverse-engineer at month-end.

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Payout to Deposit Report

Every Shopify payout generates a report linking each Sales Receipt and Refund Receipt to its QBO Deposit โ€” with fees, chargebacks, and adjustments itemized. Discrepancies flagged instantly so month-end close takes minutes, not hours.

Shopify Payout to QBO Deposit &
Discrepancy Report

Every Shopify payout generates a comprehensive report that links each transaction document to its QBO Deposit โ€” and instantly flags any discrepancies, so you close the books with confidence.

  • โœ“ Automatic Linking: Sales Receipts and Refund Receipts automatically matched to each payout's QBO Deposit
  • โœ“ Discrepancy Detection: Instantly highlights any difference between the Shopify payout amount and the QBO Deposit amount
  • โœ“ Fee & Adjustment Breakdown: Processing fees, chargebacks, disputes, and credits itemized โ€” no hunting inside QBO
  • โœ“ Single View: Side-by-side transaction counts, adjustment totals, and receipt summaries โ€” no flipping between Shopify and QBO

What the Report Shows

  • Side-by-side payout vs. QBO Deposit summary
  • Linked Sales Receipts and Refund Receipts per transaction
  • Discrepancy alerts with line-by-line problem details
  • Shopify processing fees as deposit line details
  • Credits, debits, chargebacks, and disputes itemized
  • Transaction IDs, order numbers, amounts, and account associations
See Full Report Details

Advanced Capabilities

For complex businesses and growing operations

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Multi-Store Support

Run multiple Shopify stores โ€” web and POS, B2C and B2B, or separate brands? Each store gets its own sync configuration for clean separation in QuickBooks Online. Keep your accounting organized across every storefront without manual consolidation.

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Sync What Matters Skip What Doesn't

There are use cases where not every Shopify order belongs in QuickBooks. Set rules based on order tags, customer tags, fulfillment status, or payment gateway to control exactly what syncs to QuickBooks Online.

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QuickBooks Class Assignment

Assign QuickBooks classes to items, shipping, discounts, and fees automatically. Get the granular P&L breakdowns your accountant needs โ€” by brand, channel, location, or department.

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Shipping as Line Item

Record Shopify shipping fees as a dedicated line item on every QBO Sales Receipt and Refund Receipt. Assign any Service-type QBO item to capture shipping revenue separately, with tax handling automatically matched to what Shopify charged. No shipping revenue buried in a catch-all field.

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Live Fulfillment Tracking

When Shopify marks an order fulfilled, the QBO Sales Receipt or Invoice updates automatically โ€” shipping date, tracking number, carrier (Ship via), and clickable tracking URL(s) embedded directly in the shipping line item. Every fulfillment detail lives inside QBO the moment an order ships, no copy-pasting between apps.

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Discount as Line Item

Track every Shopify discount as a dedicated line item on QBO transaction documents rather than a standard adjustment. Designate a Service-type QBO item for discounts, optionally assign a Class for departmental reporting, and get exact discount amounts synced with full audit-trail consistency at month-end.

Destination Fees & Surcharges

State-mandated retail delivery fees (e.g. Colorado, Minnesota) written as dedicated QBO line items โ€” applied only when Shopify actually charges them.

Tips

Web and POS tips synced as a dedicated line item to any income account you designate โ€” always tax-free, with optional Class assignment.

Payout Adjustment Tracking

Route each Shopify payout deduction to its own QBO account: Marketplace Sales Tax and Import Tax to liability accounts (pass-through funds remitted to tax authorities), Shipping Label Fees to an expense account, and Customs Duty to a dedicated liability account for cross-border compliance. Full visibility into every deduction โ€” no lumping fees into a single catch-all.

What Gets Synced

Complete financial visibility from Shopify to QuickBooks

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Orders

  • โœ“ Line items & totals
  • โœ“ Customer details
  • โœ“ Order notes
  • โœ“ Fulfillment status
  • โœ“ Tips
  • โœ“ Tracking number, carrier & date
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Payments & Payouts

  • โœ“ Payment methods
  • โœ“ Gateway fees
  • โœ“ Payouts & QBO Deposits
  • โœ“ Refunds
  • โœ“ Chargebacks & disputes
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Taxes

  • โœ“ Sales tax
  • โœ“ Marketplace sales tax
  • โœ“ Import tax & customs duty
  • โœ“ Tax exemptions
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Fees & Adjustments

  • โœ“ Shopify & transaction fees
  • โœ“ Shipping costs & label fees
  • โœ“ Destination surcharges
  • โœ“ Discounts & returns
  • โœ“ Gift cards & credits

See All Features in Action

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