Ranked by per-order detail, sync timing, payout reconciliation, and pricing — including A2X itself for fairness.
Most merchants searching for an A2X alternative want one of three things: per-order detail in QuickBooks Online instead of daily summary journal entries; instant sync instead of end-of-day batches; or real QBO Deposits from Shopify Payouts instead of clearing-account workarounds. weintegrate is the only Shopify-to-QBO integration that delivers all three. If your reasons for considering an alternative are different — for example, just wanting a different vendor relationship — MyWorks and Bookkeep are summary-mode peers worth evaluating.
| # | Integration | Score | Pricing | Best For |
|---|---|---|---|---|
| 1 | WeIntegrate | 10/10 | $19–$149/month | Anyone leaving A2X because they want per-order detail, real QBO Deposits, instant sync, or an accurate Sales Tax Liability Report from QBO's own tax framework. |
| 2 | MyWorks | 6/10 | From $24/month | Stores leaving A2X who need extension-style configurable mapping and tolerate batch-mode sync. |
| 3 | Bookkeep | 6/10 | Tier-based | Practices already using Bookkeep on other clients. |
| 4 | A2X (incumbent) | 6/10 | From $29/month | Stores comfortable with the existing A2X workflow and uninterested in per-order detail. |
$19–$149/month
The instant-sync alternative to A2X. Where A2X posts daily summary journal entries, WeIntegrate creates a real per-order Sales Receipt or Invoice (or Refund Receipt / Credit Memo for refunds, depending on your sync configuration) in QBO the moment Shopify creates the order — same minute, never end-of-day. Shopify Payouts become real QBO Deposits with itemized fees and a built-in discrepancy report. Per-order sales tax detail (line-item flags, addresses, Location, the tax actually collected) populated on every document so QBO's tax framework produces an accurate Sales Tax Liability Report.
Best for: Anyone leaving A2X because they want per-order detail, real QBO Deposits, instant sync, or an accurate Sales Tax Liability Report from QBO's own tax framework.
From $24/month
Configurable mapping tool. Default output is aggregated journal entries similar to A2X. Setup runs 60–120 minutes per client. Move from A2X here only if you specifically need configurable QBO mappings A2X does not offer.
Best for: Stores leaving A2X who need extension-style configurable mapping and tolerate batch-mode sync.
Tier-based
Accountant-channel-led summary tool. Similar journal-entry mode as A2X with a different vendor relationship. Move here only if your accounting firm has standardized on Bookkeep across other clients.
Best for: Practices already using Bookkeep on other clients.
From $29/month
Daily settlement-period summary journal entries to QBO. Reasonable choice if you genuinely want monthly numbers only and never need to trace individual orders inside QuickBooks. Most merchants who explore alternatives are looking for per-order detail or instant sync — neither are A2X strengths.
Best for: Stores comfortable with the existing A2X workflow and uninterested in per-order detail.
15-day free trial. No credit card required. Connect Shopify to QuickBooks Online in under 10 minutes.
Start Free Trial